Variant report

Variant	rs34465110
Chromosome Location	chr4:8499652-8499653
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8498123..8500167-chr4:8506357..8507950,2	MCF-7	breast:
2	chr4:8499417..8502342-chr4:8505170..8507298,2	MCF-7	breast:
3	chr4:8499557..8501918-chr4:8533819..8536050,2	MCF-7	breast:
4	chr4:8493970..8498267-chr4:8498833..8501951,5	K562	blood:
5	chr4:8475299..8477901-chr4:8499421..8502393,2	MCF-7	breast:
6	chr4:8499473..8501004-chr4:8548114..8550892,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10938716	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10938717	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13105415	0.84[ASN][1000 genomes]
rs13105907	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13106582	0.85[ASN][1000 genomes]
rs13111630	0.84[ASN][1000 genomes]
rs13120514	0.84[ASN][1000 genomes]
rs13120605	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13121817	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13122276	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13129077	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13132875	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13141535	0.87[ASN][1000 genomes]
rs13147943	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16842355	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34053441	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34565752	0.81[EUR][1000 genomes]
rs34621669	0.83[EUR][1000 genomes]
rs34681013	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34935132	0.96[EUR][1000 genomes]
rs35769879	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36122693	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3796763	0.87[ASN][1000 genomes]
rs3806811	0.83[ASN][1000 genomes]
rs56786736	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60080531	0.87[ASN][1000 genomes]
rs6811968	0.85[ASN][1000 genomes]
rs6813502	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6816430	0.82[ASN][1000 genomes]
rs6832505	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6832668	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73089514	0.83[ASN][1000 genomes]
rs7670021	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8473600-8501400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:8478000-8500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:8479200-8501400	Weak transcription	Liver	Liver
4	chr4:8480200-8501400	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:8481400-8501400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:8482200-8501400	Weak transcription	Primary T cells from cord blood	blood
7	chr4:8491000-8501400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:8491000-8505200	Weak transcription	Fetal Brain Female	brain
9	chr4:8495800-8501400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:8496200-8501400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:8496400-8501200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:8497000-8504200	Weak transcription	Right Atrium	heart
13	chr4:8497600-8501200	Weak transcription	Lung	lung
14	chr4:8498400-8500800	Weak transcription	Ovary	ovary
15	chr4:8499400-8500000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr4:8499600-8501200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr4:8499600-8501600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links