Variant report

Variant	rs34681013
Chromosome Location	chr4:8509262-8509263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10938716	0.80[EUR][1000 genomes]
rs10938717	0.80[EUR][1000 genomes]
rs13105907	0.89[EUR][1000 genomes]
rs13111630	0.85[EUR][1000 genomes]
rs13120605	0.92[EUR][1000 genomes]
rs13121817	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13122276	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13129077	0.93[AFR][1000 genomes]
rs13132875	0.93[AFR][1000 genomes]
rs13147943	0.89[EUR][1000 genomes]
rs16842355	0.86[AFR][1000 genomes]
rs34053441	0.89[EUR][1000 genomes]
rs34465110	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34565752	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34621669	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34935132	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35769879	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36122693	0.93[EUR][1000 genomes]
rs56786736	0.91[EUR][1000 genomes]
rs6813502	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6832505	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6832668	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7670021	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3327752	chr4:8507302-8509800	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8501800-8510600	Enhancers	Ovary	ovary
2	chr4:8502800-8512800	Enhancers	Placenta	Placenta
3	chr4:8503600-8509400	Enhancers	Right Ventricle	heart
4	chr4:8503600-8509800	Enhancers	Adipose Nuclei	Adipose
5	chr4:8504200-8509400	Enhancers	Right Atrium	heart
6	chr4:8504200-8510600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:8504600-8510800	Enhancers	Fetal Muscle Leg	muscle
8	chr4:8505800-8509600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:8505800-8509800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:8506200-8509600	Enhancers	HSMMtube	muscle
11	chr4:8507000-8509800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:8507200-8509400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:8507200-8509400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:8507200-8512000	Weak transcription	Gastric	stomach
15	chr4:8507400-8509400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:8507400-8509400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:8507400-8509400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:8507600-8509400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:8507600-8509400	Enhancers	Fetal Lung	lung
20	chr4:8507600-8509600	Enhancers	Colon Smooth Muscle	Colon
21	chr4:8507800-8509400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:8507800-8509400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:8507800-8509400	Enhancers	Brain Angular Gyrus	brain
24	chr4:8507800-8509400	Enhancers	Brain Anterior Caudate	brain
25	chr4:8507800-8509400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:8507800-8509600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:8507800-8509600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:8507800-8509600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr4:8507800-8509600	Enhancers	HSMM	muscle
30	chr4:8507800-8509800	Enhancers	Rectal Smooth Muscle	rectum
31	chr4:8507800-8510000	Enhancers	NHDF-Ad	bronchial
32	chr4:8508000-8509400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr4:8508000-8509400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:8508000-8509400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr4:8508000-8509600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr4:8508000-8509600	Enhancers	NHLF	lung
37	chr4:8508200-8509400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr4:8508200-8509400	Enhancers	Psoas Muscle	Psoas
39	chr4:8508200-8509600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr4:8508200-8511600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:8508400-8509400	Enhancers	Stomach Mucosa	stomach
42	chr4:8508400-8510400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:8508600-8509400	Enhancers	Brain Cingulate Gyrus	brain
44	chr4:8508800-8509400	Bivalent Enhancer	Fetal Stomach	stomach
45	chr4:8508800-8509600	Enhancers	Osteobl	bone
46	chr4:8509000-8509400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:8509000-8509400	Enhancers	Duodenum Mucosa	Duodenum
48	chr4:8509000-8509600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:8509000-8509800	Enhancers	Fetal Muscle Trunk	muscle
50	chr4:8509000-8510000	Weak transcription	Spleen	Spleen

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