Variant report

Variant	rs34466526
Chromosome Location	chr9:94545542-94545543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94543593..94546607-chr9:94711686..94713670,3	K562	blood:
2	chr9:94542440..94546170-chr9:94710664..94713670,3	K562	blood:
3	chr9:94538454..94541185-chr9:94545334..94547122,2	K562	blood:
4	chr9:94545257..94548150-chr9:94554695..94556652,2	K562	blood:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10992091	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992092	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992093	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992097	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7025400	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7029673	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7029809	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7041425	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71494476	0.83[AFR][1000 genomes]
rs72744489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651504	0.83[AFR][1000 genomes]
rs7860482	0.83[AFR][1000 genomes]
rs7862819	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7863557	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7872865	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94533400-94549600	Weak transcription	Colonic Mucosa	Colon
2	chr9:94534400-94546800	Weak transcription	Fetal Kidney	kidney
3	chr9:94537800-94546000	Weak transcription	Gastric	stomach
4	chr9:94538000-94548800	Weak transcription	Esophagus	oesophagus
5	chr9:94540600-94546000	Weak transcription	K562	blood
6	chr9:94543200-94546600	Enhancers	Fetal Lung	lung
7	chr9:94543400-94549200	Enhancers	Colon Smooth Muscle	Colon
8	chr9:94543600-94551200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:94543800-94549000	Weak transcription	Fetal Heart	heart
10	chr9:94544200-94545800	Enhancers	Primary T cells from cord blood	blood
11	chr9:94544600-94545800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:94544600-94546600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:94544600-94551000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:94544800-94545800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr9:94544800-94546200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr9:94545000-94545600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:94545000-94545600	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr9:94545000-94545800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:94545000-94546000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:94545000-94547400	Genic enhancers	Fetal Stomach	stomach
21	chr9:94545200-94546000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:94545400-94545600	Enhancers	Rectal Smooth Muscle	rectum
23	chr9:94545400-94546800	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr9:94545400-94547600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:94545400-94553000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:94545400-94555800	Weak transcription	Ovary	ovary

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