Variant report

Variant	rs7872865
Chromosome Location	chr9:94521117-94521118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94520719..94521310-chr9:94740804..94741565,4	MCF-7	breast:
2	chr9:94496562..94497107-chr9:94520780..94521483,2	MCF-7	breast:
3	chr9:94520440..94521332-chr9:94712111..94713033,4	K562	blood:
4	chr9:94520499..94521292-chr9:94533176..94533953,2	MCF-7	breast:
5	chr9:94516080..94518691-chr9:94519626..94521518,2	MCF-7	breast:
6	chr9:94520495..94521314-chr9:94740802..94741704,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10992091	0.86[AFR][1000 genomes]
rs10992092	0.85[AFR][1000 genomes]
rs10992093	0.85[AFR][1000 genomes]
rs10992097	0.84[AFR][1000 genomes]
rs17586150	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34134725	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34276248	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34447092	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34466526	0.82[AFR][1000 genomes]
rs34559953	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35022100	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35238595	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35557004	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35725000	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35810339	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7025400	0.89[AFR][1000 genomes]
rs7029673	0.86[AFR][1000 genomes]
rs7029809	0.84[AFR][1000 genomes]
rs7035950	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7041425	0.84[AFR][1000 genomes]
rs71494474	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71494475	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71494476	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71494477	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71494478	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72744489	0.82[AFR][1000 genomes]
rs73651504	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7852408	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7860482	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7862819	0.89[AFR][1000 genomes]
rs7863557	0.86[AFR][1000 genomes]
rs7872353	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7872615	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
2	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:94499800-94522800	Weak transcription	Gastric	stomach
4	chr9:94499800-94523200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:94506200-94523600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:94509800-94521400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:94514600-94523600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:94514800-94527800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:94515800-94522200	Strong transcription	Fetal Stomach	stomach
10	chr9:94518000-94522200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:94519000-94521400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:94519000-94522000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:94519000-94523000	Weak transcription	Fetal Intestine Large	intestine
14	chr9:94519400-94532400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:94520000-94521200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:94520200-94521200	Enhancers	Colon Smooth Muscle	Colon
17	chr9:94520400-94521200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:94520800-94521200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:94520800-94521200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:94520800-94521200	Enhancers	Duodenum Mucosa	Duodenum
21	chr9:94520800-94521200	Enhancers	Ovary	ovary
22	chr9:94520800-94521200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr9:94520800-94521400	Enhancers	Fetal Heart	heart
24	chr9:94520800-94522800	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr9:94520800-94523400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr9:94521000-94521200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:94521000-94521200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:94521000-94521200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr9:94521000-94521200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:94521000-94521200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr9:94521000-94521200	Enhancers	Fetal Lung	lung
32	chr9:94521000-94521200	Enhancers	Right Atrium	heart
33	chr9:94521000-94521200	Enhancers	Spleen	Spleen
34	chr9:94521000-94521200	Genic enhancers	K562	blood
35	chr9:94521000-94521400	Bivalent Enhancer	HepG2	liver
36	chr9:94521000-94527800	Weak transcription	Stomach Smooth Muscle	stomach

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