Variant report

Variant	rs7872353
Chromosome Location	chr9:94533245-94533246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94520499..94521292-chr9:94533176..94533953,2	MCF-7	breast:
2	chr9:94533140..94534672-chr9:94535673..94537845,2	MCF-7	breast:
3	chr9:94527497..94529105-chr9:94533152..94535517,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17585941	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17586150	1.00[CEU][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34134725	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34276248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34447092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34559953	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35022100	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35238595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35557004	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35725000	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35810339	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035950	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71494474	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71494475	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494476	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71494477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494478	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651504	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7852408	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7860482	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872615	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7872865	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:94527600-94538800	Weak transcription	K562	blood
3	chr9:94529400-94539800	Enhancers	Colon Smooth Muscle	Colon
4	chr9:94530400-94535200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:94531600-94533600	Enhancers	Esophagus	oesophagus
6	chr9:94532200-94537000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr9:94532200-94539200	Enhancers	Fetal Heart	heart
8	chr9:94532400-94533400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:94532400-94533600	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr9:94532400-94534600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:94532600-94533400	Enhancers	Fetal Brain Male	brain
12	chr9:94532600-94533400	Enhancers	Fetal Thymus	thymus
13	chr9:94532600-94533600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:94532600-94533600	Enhancers	Placenta	Placenta
15	chr9:94532600-94534000	Enhancers	HMEC	breast
16	chr9:94532600-94534400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:94532800-94533400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:94532800-94533400	Enhancers	Colonic Mucosa	Colon
19	chr9:94532800-94533600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:94532800-94533800	Flanking Active TSS	NHEK	skin
21	chr9:94532800-94534000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr9:94532800-94534000	Enhancers	Stomach Mucosa	stomach
23	chr9:94532800-94534200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:94532800-94534400	Enhancers	HSMM	muscle
25	chr9:94532800-94534800	Enhancers	Ovary	ovary
26	chr9:94532800-94535400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:94532800-94536000	Enhancers	HSMMtube	muscle
28	chr9:94532800-94536400	Enhancers	Fetal Lung	lung
29	chr9:94533000-94533400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:94533000-94533400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:94533000-94533400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:94533000-94533400	Enhancers	Adipose Nuclei	Adipose
33	chr9:94533000-94533400	Enhancers	Gastric	stomach
34	chr9:94533000-94533400	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr9:94533000-94533400	Flanking Active TSS	NHDF-Ad	bronchial
36	chr9:94533000-94533800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:94533000-94533800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr9:94533000-94534200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:94533000-94534200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:94533000-94534200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr9:94533000-94534200	Enhancers	Fetal Stomach	stomach
42	chr9:94533000-94534400	Enhancers	Fetal Kidney	kidney
43	chr9:94533000-94534600	Enhancers	NH-A	brain
44	chr9:94533000-94535200	Enhancers	Fetal Intestine Small	intestine
45	chr9:94533000-94542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:94533000-94543600	Weak transcription	Right Atrium	heart
47	chr9:94533200-94533400	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr9:94533200-94533400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr9:94533200-94533400	Flanking Active TSS	Osteobl	bone
50	chr9:94533200-94533600	Enhancers	Fetal Intestine Large	intestine

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