Variant report

Variant	rs17586150
Chromosome Location	chr9:94534777-94534778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94533336..94534896-chr9:94707634..94709527,2	MCF-7	breast:
2	chr9:94534777..94536619-chr9:94540454..94542317,2	MCF-7	breast:
3	chr9:94527497..94529105-chr9:94533152..94535517,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17585941	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs34134725	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34276248	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34447092	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34559953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35022100	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35238595	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35557004	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35725000	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35810339	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035950	1.00[CEU][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71494474	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71494475	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494476	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71494477	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651504	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7852408	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7860482	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872353	1.00[CEU][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7872615	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7872865	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:94527600-94538800	Weak transcription	K562	blood
3	chr9:94529400-94539800	Enhancers	Colon Smooth Muscle	Colon
4	chr9:94530400-94535200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:94532200-94537000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr9:94532200-94539200	Enhancers	Fetal Heart	heart
7	chr9:94532800-94534800	Enhancers	Ovary	ovary
8	chr9:94532800-94535400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:94532800-94536000	Enhancers	HSMMtube	muscle
10	chr9:94532800-94536400	Enhancers	Fetal Lung	lung
11	chr9:94533000-94535200	Enhancers	Fetal Intestine Small	intestine
12	chr9:94533000-94542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:94533000-94543600	Weak transcription	Right Atrium	heart
14	chr9:94533400-94535000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:94533400-94535200	Enhancers	NHDF-Ad	bronchial
16	chr9:94533400-94535800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:94533400-94537600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:94533400-94537600	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:94533400-94549600	Weak transcription	Colonic Mucosa	Colon
20	chr9:94533600-94534800	Weak transcription	Fetal Intestine Large	intestine
21	chr9:94533600-94535000	Enhancers	NHLF	lung
22	chr9:94533600-94535200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:94533600-94535600	Weak transcription	Esophagus	oesophagus
24	chr9:94533600-94545400	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:94533800-94534800	Enhancers	Osteobl	bone
26	chr9:94533800-94535000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:94534000-94535600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:94534000-94536600	Enhancers	Placenta	Placenta
29	chr9:94534200-94534800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:94534200-94535000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:94534200-94535400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:94534200-94535400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:94534200-94537400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:94534200-94538200	Genic enhancers	Fetal Stomach	stomach
35	chr9:94534400-94534800	Enhancers	Gastric	stomach
36	chr9:94534400-94535600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:94534400-94535600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr9:94534400-94546800	Weak transcription	Fetal Kidney	kidney
39	chr9:94534600-94534800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:94534600-94534800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr9:94534600-94535400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:94534600-94537600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:94534600-94538000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:94534600-94538800	Weak transcription	Spleen	Spleen
45	chr9:94534600-94539400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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