Variant report

Variant	rs7852408
Chromosome Location	chr9:94522902-94522903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17586150	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34134725	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34276248	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34447092	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34559953	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35022100	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35238595	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35557004	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35725000	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35810339	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7035950	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71494474	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71494475	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71494476	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71494477	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71494478	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73651504	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7860482	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7872353	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872615	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872865	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
2	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:94499800-94523200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:94506200-94523600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:94514600-94523600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:94514800-94527800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:94519000-94523000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:94519400-94532400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:94520800-94523400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr9:94521000-94527800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:94521200-94523600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:94521200-94524000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:94521200-94527000	Weak transcription	K562	blood
14	chr9:94521200-94528200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:94521200-94532600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:94521200-94532800	Weak transcription	Ovary	ovary
17	chr9:94522200-94523400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:94522200-94528400	Weak transcription	Fetal Stomach	stomach
19	chr9:94522400-94523800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:94522800-94523600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links