Variant report

Variant	rs344671
Chromosome Location	chr3:102698906-102698907
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13090746	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1440778	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1515524	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs163940	0.91[ASN][1000 genomes]
rs2398832	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs344664	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs344670	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs344678	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs345587	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs346882	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs346887	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs346888	0.84[ASN][1000 genomes]
rs346889	0.84[ASN][1000 genomes]
rs346891	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs346892	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs346893	0.84[ASN][1000 genomes]
rs346896	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62274876	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6801174	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs708290	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708308	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826339	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9832428	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv877228	chr3:102345638-102751470	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102697600-102699800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:102697600-102700400	Enhancers	NH-A	brain
3	chr3:102698000-102699200	Enhancers	Aorta	Aorta
4	chr3:102698000-102699400	Enhancers	Fetal Stomach	stomach
5	chr3:102698000-102699600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:102698000-102699800	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:102698200-102699400	Enhancers	Fetal Lung	lung
8	chr3:102698200-102699400	Enhancers	NHDF-Ad	bronchial
9	chr3:102698200-102699600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:102698400-102699600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:102698400-102699600	Enhancers	Osteobl	bone
12	chr3:102698600-102699000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:102698800-102699000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:102698800-102699000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr3:102698800-102699000	Flanking Active TSS	Colon Smooth Muscle	Colon
16	chr3:102698800-102699000	Flanking Active TSS	Hela-S3	cervix
17	chr3:102698800-102699200	Enhancers	Right Atrium	heart
18	chr3:102698800-102699400	Enhancers	Adipose Nuclei	Adipose
19	chr3:102698800-102699400	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr3:102698800-102699400	Enhancers	NHLF	lung
21	chr3:102698800-102699600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:102698800-102699600	Enhancers	Fetal Muscle Leg	muscle
23	chr3:102698800-102699600	Enhancers	Left Ventricle	heart

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