Variant report

Variant	rs34495740
Chromosome Location	chr1:84587163-84587164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10493750	0.93[ASN][1000 genomes]
rs11163898	0.95[ASN][1000 genomes]
rs11163900	0.93[ASN][1000 genomes]
rs12070547	0.89[ASN][1000 genomes]
rs12132032	0.93[ASN][1000 genomes]
rs12404263	0.95[ASN][1000 genomes]
rs12405120	0.93[ASN][1000 genomes]
rs12724598	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12746741	0.89[ASN][1000 genomes]
rs28573761	1.00[AFR][1000 genomes]
rs35452337	0.87[ASN][1000 genomes]
rs3861699	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6669045	0.93[ASN][1000 genomes]
rs67276144	0.89[ASN][1000 genomes]
rs72711192	0.93[ASN][1000 genomes]
rs953197	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546689	chr1:84531117-84670816	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv546690	chr1:84562265-84655238	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84569200-84587400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:84569200-84599600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:84569400-84587400	Weak transcription	Ovary	ovary
4	chr1:84574000-84587400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:84576000-84591800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:84584000-84587200	Weak transcription	Fetal Heart	heart
7	chr1:84584000-84587400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:84584000-84587400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:84584000-84587800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:84584000-84591000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:84584000-84592600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:84584000-84609600	Weak transcription	HSMM	muscle
13	chr1:84584000-84609800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links