Variant report

Variant	rs6669045
Chromosome Location	chr1:84560735-84560736
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84559252..84561971-chr1:84565558..84569310,4	K562	blood:
2	chr1:84553847..84557736-chr1:84560723..84565476,4	K562	blood:
3	chr1:84551652..84556823-chr1:84558383..84561144,5	K562	blood:
4	chr1:84540590..84543508-chr1:84558962..84560991,2	K562	blood:
5	chr1:84556236..84558984-chr1:84559547..84561523,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1021490	0.82[AMR][1000 genomes]
rs10493750	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163898	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163900	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070547	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12132032	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404263	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12405120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724598	0.93[ASN][1000 genomes]
rs12746741	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12750691	0.84[AMR][1000 genomes]
rs1565823	0.86[AMR][1000 genomes]
rs34179759	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34495740	0.93[ASN][1000 genomes]
rs35452337	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3861699	0.88[ASN][1000 genomes]
rs67276144	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72711192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953197	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546689	chr1:84531117-84670816	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84545000-84561200	Weak transcription	Ovary	ovary
2	chr1:84545000-84566800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:84545000-84570000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:84545200-84568600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:84545400-84560800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:84545800-84568600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:84552200-84561800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:84552200-84561800	Weak transcription	Right Atrium	heart
9	chr1:84552200-84569000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:84552600-84562000	Weak transcription	Fetal Stomach	stomach
11	chr1:84555400-84568400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:84556400-84568400	Weak transcription	Brain Angular Gyrus	brain
13	chr1:84556400-84568400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:84556400-84568400	Weak transcription	A549	lung
15	chr1:84556400-84568400	Weak transcription	HSMM	muscle
16	chr1:84556400-84569000	Weak transcription	Left Ventricle	heart
17	chr1:84556600-84561000	Weak transcription	HMEC	breast
18	chr1:84556600-84566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:84556600-84566600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:84556600-84568600	Weak transcription	Brain Substantia Nigra	brain
21	chr1:84559800-84560800	Enhancers	NH-A	brain
22	chr1:84560400-84562000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:84560400-84562200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:84560600-84561000	ZNF genes & repeats	Fetal Lung	lung

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