Variant report

Variant	rs34498616
Chromosome Location	chr5:178245322-178245323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12651867	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12653704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12654347	1.00[AMR][1000 genomes]
rs34841481	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60425051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60476984	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62392961	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62392964	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62393007	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62393009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62393035	1.00[EUR][1000 genomes]
rs62393905	1.00[AMR][1000 genomes]
rs62393906	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62393907	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62393909	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62393910	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7443613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178236800-178255800	Weak transcription	K562	blood
2	chr5:178241200-178252400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:178245200-178245400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:178245200-178245600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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