Variant report

Variant	rs62393909
Chromosome Location	chr5:178220941-178220942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10039698	0.85[ASN][1000 genomes]
rs10043140	0.85[ASN][1000 genomes]
rs12651867	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12653704	0.85[AMR][1000 genomes]
rs12654347	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34498616	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60425051	0.85[AMR][1000 genomes]
rs62392961	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62392964	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62393009	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62393902	0.84[ASN][1000 genomes]
rs62393905	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62393906	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62393907	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62393910	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7443613	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7444300	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv462573	chr5:178180299-178241495	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv600452	chr5:178180299-178241495	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178166600-178224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:178220200-178221200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:178220400-178221200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:178220400-178221200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:178220800-178221200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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