Variant report

Variant	rs34503478
Chromosome Location	chr7:96464468-96464469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1403186	0.85[AFR][1000 genomes]
rs1522525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2922967	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2948274	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5857	chr7:96440164-96494110	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5	chr7:96451352-96494110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96462000-96466200	Weak transcription	Spleen	Spleen
2	chr7:96463400-96465800	Weak transcription	Ovary	ovary
3	chr7:96463600-96465800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:96463800-96465400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:96463800-96466800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:96463800-96466800	Weak transcription	Osteobl	bone
7	chr7:96464000-96466400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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