Variant report

Variant	rs1522525
Chromosome Location	chr7:96467852-96467853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1403186	0.85[AFR][1000 genomes]
rs2922967	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2948271	1.00[YRI][hapmap]
rs2948272	0.90[YRI][hapmap]
rs2948274	0.85[AFR][1000 genomes]
rs34503478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5857	chr7:96440164-96494110	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5	chr7:96451352-96494110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96465200-96469000	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr7:96465400-96468600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:96465400-96468600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:96465400-96469200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:96466000-96468000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:96466000-96468200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:96466200-96468200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:96466200-96468200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr7:96466400-96469200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr7:96466600-96469000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr7:96467000-96468000	Weak transcription	HepG2	liver
12	chr7:96467000-96468800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr7:96467000-96468800	Enhancers	Dnd41	blood
14	chr7:96467400-96468000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr7:96467400-96468200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:96467800-96468000	Enhancers	Fetal Thymus	thymus
17	chr7:96467800-96468000	Weak transcription	Ovary	ovary
18	chr7:96467800-96468600	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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