Variant report

Variant	rs2948271
Chromosome Location	chr7:96482603-96482604
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1522525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2922967	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2948272	0.90[YRI][hapmap]
rs34503478	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465552	0.96[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5857	chr7:96440164-96494110	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5	chr7:96451352-96494110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv435846	chr7:96474570-96483028	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	n/a	diseases
4	nsv508472	chr7:96474696-96491567	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3493264	chr7:96475216-96483264	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	n/a	diseases
6	nsv436553	chr7:96475380-96482918	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	n/a	diseases
7	esv2575268	chr7:96475508-96482908	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	n/a	diseases
8	esv3493266	chr7:96475733-96482621	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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