Variant report
| Variant | rs6465552 |
|---|---|
| Chromosome Location | chr7:96482800-96482801 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:96473083..96476010-chr7:96482682..96485380,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10278325 | 1.00[EUR][1000 genomes] |
| rs1522527 | 0.93[YRI][hapmap] |
| rs1522530 | 1.00[EUR][1000 genomes] |
| rs2922964 | 0.86[EUR][1000 genomes] |
| rs2948250 | 0.93[EUR][1000 genomes] |
| rs2948269 | 0.93[EUR][1000 genomes] |
| rs2948271 | 0.96[LWK][hapmap] |
| rs2948273 | 1.00[CEU][hapmap] |
| rs2969407 | 0.93[EUR][1000 genomes] |
| rs4236535 | 1.00[EUR][1000 genomes] |
| rs9648904 | 1.00[CEU][hapmap];0.92[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv5857 | chr7:96440164-96494110 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv5 | chr7:96451352-96494110 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv435846 | chr7:96474570-96483028 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | n/a | diseases |
| 4 | nsv508472 | chr7:96474696-96491567 | Enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3493264 | chr7:96475216-96483264 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | n/a | diseases |
| 6 | nsv436553 | chr7:96475380-96482918 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | n/a | diseases |
| 7 | esv2575268 | chr7:96475508-96482908 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | n/a | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
