Variant report

Variant	rs9648904
Chromosome Location	chr7:96487115-96487116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10278325	1.00[EUR][1000 genomes]
rs1522527	0.86[YRI][hapmap]
rs1522530	1.00[EUR][1000 genomes]
rs2922964	0.86[EUR][1000 genomes]
rs2948250	0.93[EUR][1000 genomes]
rs2948269	0.93[EUR][1000 genomes]
rs2948273	1.00[CEU][hapmap]
rs2969407	0.93[EUR][1000 genomes]
rs4236535	1.00[EUR][1000 genomes]
rs6465552	1.00[CEU][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5857	chr7:96440164-96494110	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5	chr7:96451352-96494110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv508472	chr7:96474696-96491567	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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