Variant report

Variant	rs34504254
Chromosome Location	chr9:13296833-13296834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13278476..13280409-chr9:13296744..13299210,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107186	Chromatin interaction
ENSG00000234740	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511579	0.90[AMR][1000 genomes]
rs10756466	0.89[EUR][1000 genomes]
rs10809923	1.00[ASN][1000 genomes]
rs10809926	1.00[ASN][1000 genomes]
rs11790299	1.00[ASN][1000 genomes]
rs13290727	1.00[ASN][1000 genomes]
rs13293585	0.88[AMR][1000 genomes]
rs13297131	1.00[ASN][1000 genomes]
rs17183700	0.81[EUR][1000 genomes]
rs1854665	1.00[ASN][1000 genomes]
rs1888150	1.00[ASN][1000 genomes]
rs1980994	1.00[ASN][1000 genomes]
rs2149988	1.00[ASN][1000 genomes]
rs34101279	1.00[ASN][1000 genomes]
rs34161313	0.94[AMR][1000 genomes]
rs34306347	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34423860	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34714632	1.00[ASN][1000 genomes]
rs34744607	0.85[EUR][1000 genomes]
rs34862901	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35309512	0.90[AMR][1000 genomes]
rs4392997	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047995	1.00[ASN][1000 genomes]
rs713497	0.94[AMR][1000 genomes]
rs71507372	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71507376	0.94[AMR][1000 genomes]
rs7866658	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links