Variant report

Variant	rs34509
Chromosome Location	chr5:92313841-92313842
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34521	0.94[ASN][1000 genomes]
rs34522	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs42433	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92312800-92318200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:92313000-92315200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:92313000-92316000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:92313200-92314000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:92313200-92314400	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr5:92313400-92314000	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr5:92313400-92314600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:92313400-92314600	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr5:92313400-92315200	Enhancers	Fetal Brain Male	brain
10	chr5:92313400-92315400	Enhancers	Fetal Brain Female	brain
11	chr5:92313600-92314200	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr5:92313600-92314200	Active TSS	Brain Substantia Nigra	brain
13	chr5:92313600-92314400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:92313600-92314400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:92313600-92314400	Active TSS	Brain Angular Gyrus	brain
16	chr5:92313800-92314400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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