Variant report

Variant	rs34515997
Chromosome Location	chr8:130289572-130289573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13252273	1.00[AFR][1000 genomes]
rs13255648	1.00[AMR][1000 genomes]
rs35354692	1.00[AFR][1000 genomes]
rs35780345	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62525279	1.00[EUR][1000 genomes]
rs71522545	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130278800-130290600	Weak transcription	K562	blood
2	chr8:130287200-130290000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:130288600-130290400	Weak transcription	Dnd41	blood
4	chr8:130288800-130289800	Enhancers	Fetal Kidney	kidney
5	chr8:130289400-130290400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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