Variant report

Variant	rs34530733
Chromosome Location	chr18:45681274-45681275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45680562..45685568-chr18:45685976..45689929,7	MCF-7	breast:
2	chr18:45679021..45685767-chr18:45685990..45688234,7	MCF-7	breast:
3	chr18:45678532..45681545-chr18:45682420..45685312,3	MCF-7	breast:
4	chr18:45674100..45677757-chr18:45678763..45682231,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12456907	1.00[AFR][1000 genomes]
rs12968885	0.83[EUR][1000 genomes]
rs34699687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35034982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71355332	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:45675800-45682800	Enhancers	Placenta	Placenta
3	chr18:45677200-45682200	Enhancers	Hela-S3	cervix
4	chr18:45677400-45681800	Enhancers	Stomach Mucosa	stomach
5	chr18:45677800-45682200	Enhancers	Ovary	ovary
6	chr18:45678000-45681600	Enhancers	Liver	Liver
7	chr18:45678000-45681800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr18:45678000-45684600	Enhancers	HMEC	breast
9	chr18:45678200-45681600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr18:45678200-45684400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr18:45678400-45687200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:45678600-45686800	Weak transcription	Fetal Muscle Leg	muscle
13	chr18:45679200-45681400	Enhancers	Esophagus	oesophagus
14	chr18:45679400-45684200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr18:45679800-45681400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr18:45679800-45681400	Enhancers	Spleen	Spleen
17	chr18:45680000-45686200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr18:45680000-45687000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr18:45680400-45687000	Weak transcription	HSMMtube	muscle
20	chr18:45680600-45682400	Weak transcription	NHEK	skin
21	chr18:45680800-45681400	Enhancers	HepG2	liver
22	chr18:45680800-45682200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr18:45680800-45684200	Weak transcription	Gastric	stomach
24	chr18:45680800-45684400	Weak transcription	Pancreas	Pancrea
25	chr18:45680800-45686000	Weak transcription	Fetal Intestine Large	intestine
26	chr18:45680800-45686200	Weak transcription	Colonic Mucosa	Colon
27	chr18:45680800-45687000	Weak transcription	Fetal Intestine Small	intestine
28	chr18:45680800-45687200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr18:45680800-45687800	Weak transcription	Lung	lung
30	chr18:45681200-45681400	Enhancers	Aorta	Aorta
31	chr18:45681200-45682200	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr18:45681200-45682400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr18:45681200-45685800	Weak transcription	Rectal Mucosa Donor 31	rectum

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