Variant report

Variant	rs71355332
Chromosome Location	chr18:45670303-45670304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11661007	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11663752	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12966055	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12968885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34530733	0.83[EUR][1000 genomes]
rs34667323	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34699687	0.83[EUR][1000 genomes]
rs35034982	0.83[EUR][1000 genomes]
rs36122258	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45663800-45679800	Weak transcription	Aorta	Aorta
2	chr18:45664000-45670400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr18:45665800-45670400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr18:45668400-45671600	Enhancers	Placenta	Placenta
5	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:45669600-45670400	Enhancers	Hela-S3	cervix
7	chr18:45669600-45671600	Weak transcription	Esophagus	oesophagus
8	chr18:45669600-45678200	Weak transcription	Spleen	Spleen
9	chr18:45669800-45675000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:45670000-45674800	Weak transcription	Stomach Mucosa	stomach
11	chr18:45670200-45675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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