Variant report

Variant	rs34533519
Chromosome Location	chr10:21825374-21825375
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21784105..21788419-chr10:21820020..21825934,15	K562	blood:
2	chr10:21784774..21789957-chr10:21820858..21826220,9	MCF-7	breast:
3	chr10:21824097..21826874-chr10:22615041..22617499,2	K562	blood:
4	chr10:21822263..21825196-chr10:21825343..21829411,7	MCF-7	breast:
5	chr10:21824380..21826372-chr10:21842074..21844777,3	K562	blood:

Variant related genes	Relation type
ENSG00000078403	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74120975	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825288	chr10:21759085-21831354	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv825290	chr10:21777857-21830878	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
7	nsv894936	chr10:21781589-21827796	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
8	nsv894937	chr10:21782842-21827796	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv894938	chr10:21784899-21827796	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv894939	chr10:21789406-21830104	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv825291	chr10:21792100-21830946	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv894941	chr10:21796081-21827796	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv894944	chr10:21798241-21827796	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv894945	chr10:21798241-21830104	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv894946	chr10:21798241-21831215	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21822200-21825400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:21822600-21826000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:21822800-21837800	Weak transcription	Stomach Mucosa	stomach
4	chr10:21824400-21825600	Enhancers	Fetal Heart	heart
5	chr10:21824600-21825400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:21824600-21825400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:21824600-21825400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:21824600-21825600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:21824600-21825800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:21824600-21826000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:21824600-21827600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:21824600-21827800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:21824600-21828400	Weak transcription	Left Ventricle	heart
14	chr10:21824600-21828400	Weak transcription	Lung	lung
15	chr10:21824600-21828400	Weak transcription	Small Intestine	intestine
16	chr10:21824600-21828400	Weak transcription	Spleen	Spleen
17	chr10:21824600-21829800	Weak transcription	Colonic Mucosa	Colon
18	chr10:21824600-21842600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:21824600-21864600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:21824600-21930400	Weak transcription	Gastric	stomach
21	chr10:21824800-21825400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:21824800-21825400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr10:21824800-21825400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:21824800-21825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:21824800-21825600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:21824800-21825600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:21824800-21825600	Enhancers	GM12878-XiMat	blood
28	chr10:21824800-21825800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:21824800-21825800	Genic enhancers	Dnd41	blood
30	chr10:21824800-21826000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:21824800-21826000	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr10:21824800-21826000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:21824800-21826000	Enhancers	Brain Angular Gyrus	brain
34	chr10:21824800-21826000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:21824800-21826200	Weak transcription	Primary T cells from cord blood	blood
36	chr10:21824800-21826200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr10:21824800-21826600	Weak transcription	Primary B cells from cord blood	blood
38	chr10:21824800-21826800	Weak transcription	Liver	Liver
39	chr10:21824800-21827000	Weak transcription	Fetal Intestine Large	intestine
40	chr10:21824800-21827200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:21824800-21827200	Weak transcription	HSMM	muscle
42	chr10:21824800-21827400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr10:21824800-21827400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:21824800-21827400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:21824800-21827600	Weak transcription	Brain Anterior Caudate	brain
46	chr10:21824800-21827600	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:21824800-21827600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:21824800-21827800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:21824800-21827800	Weak transcription	Osteobl	bone
50	chr10:21824800-21828400	Weak transcription	Right Ventricle	heart

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