Variant report

Variant	rs34534676
Chromosome Location	chr11:84876988-84876989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1016636	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10501591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1377307	1.00[AFR][1000 genomes]
rs1517315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1517316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17148032	0.95[EUR][1000 genomes]
rs17743269	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17810494	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2088018	0.95[EUR][1000 genomes]
rs2101757	0.95[EUR][1000 genomes]
rs34821786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35119181	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35439288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57475455	0.90[EUR][1000 genomes]
rs7118453	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7127772	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7131233	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7947168	0.82[AMR][1000 genomes]
rs876869	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1052380	chr11:84864551-84920320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84866000-84881200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:84866400-84878400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:84866400-84878400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:84876400-84877000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:84876800-84877000	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links