Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10501591	0.95[EUR][1000 genomes]
rs11821177	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1377307	1.00[CEU][hapmap]
rs1517315	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1517316	0.95[EUR][1000 genomes]
rs17147907	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs17147910	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs17147933	1.00[CEU][hapmap]
rs17148040	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs2088018	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101757	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34534676	0.95[EUR][1000 genomes]
rs34821786	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs35119181	0.95[EUR][1000 genomes]
rs35439288	0.95[EUR][1000 genomes]
rs3936472	1.00[CEU][hapmap]
rs41507546	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs558040	1.00[JPT][hapmap]
rs57475455	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876869	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1052380	chr11:84864551-84920320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84866000-84881200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:84866400-84878400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:84866400-84878400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:84876200-84876400	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search: