Variant report
| Variant | rs11821177 |
|---|---|
| Chromosome Location | chr11:84892178-84892179 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1016636 | 1.00[ASN][1000 genomes] |
| rs10501591 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11821282 | 0.89[YRI][hapmap] |
| rs11825860 | 1.00[ASW][hapmap];0.85[MKK][hapmap] |
| rs1472241 | 1.00[JPT][hapmap] |
| rs1517315 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1517316 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17147907 | 1.00[GIH][hapmap] |
| rs17147910 | 1.00[GIH][hapmap] |
| rs17148032 | 1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17148040 | 0.95[AMR][1000 genomes] |
| rs17743080 | 1.00[ASN][1000 genomes] |
| rs17743269 | 1.00[ASN][1000 genomes] |
| rs17810494 | 1.00[ASN][1000 genomes] |
| rs17810583 | 1.00[ASN][1000 genomes] |
| rs2088018 | 1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2101757 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34534676 | 0.95[EUR][1000 genomes] |
| rs34821786 | 1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35119181 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35439288 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41507546 | 1.00[GIH][hapmap] |
| rs57475455 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs57906670 | 1.00[ASN][1000 genomes] |
| rs7118453 | 1.00[ASN][1000 genomes] |
| rs7127772 | 1.00[ASN][1000 genomes] |
| rs7131233 | 1.00[ASN][1000 genomes] |
| rs7936028 | 1.00[ASN][1000 genomes] |
| rs7947168 | 1.00[ASN][1000 genomes] |
| rs876869 | 1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527535 | chr11:84724795-84895033 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv528491 | chr11:84724795-84895033 | Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044370 | chr11:84748993-85293233 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 4 | nsv1052380 | chr11:84864551-84920320 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv898042 | chr11:84877221-84965437 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11821177 | C1orf25 | trans | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
