Variant report

Variant	rs11821282
Chromosome Location	chr11:84957679-84957680
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11821177	0.89[YRI][hapmap]
rs11821196	0.86[AFR][1000 genomes]
rs11821288	0.83[AMR][1000 genomes]
rs11822292	0.86[AFR][1000 genomes]
rs11824096	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824846	0.83[AMR][1000 genomes]
rs11827879	0.83[AMR][1000 genomes]
rs58960201	0.81[AFR][1000 genomes]
rs59376253	0.85[AMR][1000 genomes]
rs60507485	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61184572	0.83[AMR][1000 genomes]
rs7111966	0.83[AMR][1000 genomes]
rs7928064	0.86[AFR][1000 genomes]
rs7943906	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84954200-84964400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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