Variant report

Variant	rs58960201
Chromosome Location	chr11:84842540-84842541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11820110	1.00[EUR][1000 genomes]
rs11821196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821282	0.81[AFR][1000 genomes]
rs11822075	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823066	1.00[EUR][1000 genomes]
rs11823863	1.00[EUR][1000 genomes]
rs11823950	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824142	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825118	1.00[EUR][1000 genomes]
rs11825860	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827460	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828752	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55649137	1.00[EUR][1000 genomes]
rs55893782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55966246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57010664	1.00[EUR][1000 genomes]
rs57374267	1.00[EUR][1000 genomes]
rs57811920	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59019401	1.00[EUR][1000 genomes]
rs59597223	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59601533	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60734054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111966	0.84[AFR][1000 genomes]
rs7926834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7928064	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84829600-84843600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:84839000-84842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:84840400-84843400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:84841600-84842800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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