Variant report

Variant	rs11823863
Chromosome Location	chr11:84660245-84660246
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11819885	1.00[EUR][1000 genomes]
rs11820110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11820931	1.00[EUR][1000 genomes]
rs11821930	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11822005	1.00[EUR][1000 genomes]
rs11822075	1.00[EUR][1000 genomes]
rs11823066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823749	1.00[EUR][1000 genomes]
rs11823950	1.00[EUR][1000 genomes]
rs11824142	1.00[EUR][1000 genomes]
rs11825118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825651	1.00[EUR][1000 genomes]
rs11827460	1.00[EUR][1000 genomes]
rs11828495	1.00[EUR][1000 genomes]
rs11828752	1.00[EUR][1000 genomes]
rs11829016	1.00[EUR][1000 genomes]
rs55649137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893782	1.00[EUR][1000 genomes]
rs57010664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57374267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57513498	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57811920	1.00[EUR][1000 genomes]
rs58960201	1.00[EUR][1000 genomes]
rs59019401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597223	1.00[EUR][1000 genomes]
rs59601533	1.00[EUR][1000 genomes]
rs60734054	1.00[EUR][1000 genomes]
rs6592209	1.00[EUR][1000 genomes]
rs7113785	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7926834	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84658600-84661000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:84659000-84661200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:84659200-84660800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:84659200-84661200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:84659600-84660800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:84660000-84661000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:84660200-84660800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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