Variant report
| Variant | rs11824142 |
|---|---|
| Chromosome Location | chr11:84824772-84824773 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11819885 | 1.00[EUR][1000 genomes] |
| rs11820110 | 1.00[EUR][1000 genomes] |
| rs11821196 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11822075 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11822292 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11823066 | 1.00[EUR][1000 genomes] |
| rs11823863 | 1.00[EUR][1000 genomes] |
| rs11823950 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11825118 | 1.00[EUR][1000 genomes] |
| rs11825860 | 1.00[AMR][1000 genomes] |
| rs11827460 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11828495 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11828752 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11829016 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55649137 | 1.00[EUR][1000 genomes] |
| rs55893782 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55966246 | 1.00[AMR][1000 genomes] |
| rs57010664 | 1.00[EUR][1000 genomes] |
| rs57374267 | 1.00[EUR][1000 genomes] |
| rs57811920 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58960201 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59019401 | 1.00[EUR][1000 genomes] |
| rs59597223 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59601533 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60734054 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7926834 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7928064 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430415 | chr11:84661652-84833852 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1040393 | chr11:84708402-84866594 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv527535 | chr11:84724795-84895033 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv528491 | chr11:84724795-84895033 | Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1044370 | chr11:84748993-85293233 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:84821600-84825000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr11:84823000-84828000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
