Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11821196	1.00[AFR][1000 genomes]
rs11821282	0.86[AFR][1000 genomes]
rs11821288	0.83[AMR][1000 genomes]
rs11822075	0.84[AFR][1000 genomes]
rs11822292	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11823950	0.84[AFR][1000 genomes]
rs11824142	0.84[AFR][1000 genomes]
rs11824846	0.83[AMR][1000 genomes]
rs11825860	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11827460	0.84[AFR][1000 genomes]
rs11827879	0.83[AMR][1000 genomes]
rs11828674	1.00[YRI][hapmap]
rs11828752	0.84[AFR][1000 genomes]
rs55814754	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55966246	0.90[AFR][1000 genomes]
rs57811920	0.84[AFR][1000 genomes]
rs58960201	0.95[AFR][1000 genomes]
rs59597223	0.84[AFR][1000 genomes]
rs59601533	0.84[AFR][1000 genomes]
rs60507485	0.85[AMR][1000 genomes]
rs61184572	0.83[AMR][1000 genomes]
rs7111966	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7943906	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv3413682	chr11:84963840-84964168	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84954200-84964400	Weak transcription	Psoas Muscle	Psoas
2	chr11:84959600-84964600	Weak transcription	Ovary	ovary
3	chr11:84961200-84964400	Weak transcription	Fetal Intestine Small	intestine
4	chr11:84963800-84972800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:84964000-84964400	Weak transcription	Left Ventricle	heart

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