Variant report

Variant	rs55966246
Chromosome Location	chr11:84907392-84907393
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11821196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822075	1.00[AMR][1000 genomes]
rs11822292	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823950	1.00[AMR][1000 genomes]
rs11824142	1.00[AMR][1000 genomes]
rs11825860	1.00[AMR][1000 genomes]
rs11827460	1.00[AMR][1000 genomes]
rs11828495	1.00[AMR][1000 genomes]
rs11828752	1.00[AMR][1000 genomes]
rs11829016	1.00[AMR][1000 genomes]
rs55814754	0.90[AFR][1000 genomes]
rs55893782	1.00[AMR][1000 genomes]
rs57811920	1.00[AMR][1000 genomes]
rs58960201	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59597223	1.00[AMR][1000 genomes]
rs59601533	1.00[AMR][1000 genomes]
rs60507485	0.87[AFR][1000 genomes]
rs60734054	1.00[AMR][1000 genomes]
rs7111966	0.80[AFR][1000 genomes]
rs7926834	1.00[AMR][1000 genomes]
rs7928064	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1052380	chr11:84864551-84920320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84907000-84907600	Enhancers	Fetal Intestine Large	intestine
2	chr11:84907200-84908600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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