Variant report

Variant	rs11822075
Chromosome Location	chr11:84828231-84828232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11819885	1.00[EUR][1000 genomes]
rs11820110	1.00[EUR][1000 genomes]
rs11821196	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822292	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823066	1.00[EUR][1000 genomes]
rs11823863	1.00[EUR][1000 genomes]
rs11823950	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825118	1.00[EUR][1000 genomes]
rs11825860	1.00[AMR][1000 genomes]
rs11827460	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828752	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55649137	1.00[EUR][1000 genomes]
rs55893782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55966246	1.00[AMR][1000 genomes]
rs57010664	1.00[EUR][1000 genomes]
rs57374267	1.00[EUR][1000 genomes]
rs57811920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58960201	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59019401	1.00[EUR][1000 genomes]
rs59597223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59601533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60734054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7926834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7928064	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84826800-84828400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:84827200-84828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:84827200-84829000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:84827200-84829000	Weak transcription	A549	lung
5	chr11:84827200-84829000	Weak transcription	NH-A	brain
6	chr11:84827200-84829400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:84827200-84829800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:84828000-84830400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:84828200-84829200	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links