Variant report
| Variant | rs11819885 |
|---|---|
| Chromosome Location | chr11:84636736-84636737 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr11:84636721-84636845 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DLG2 | TF binding region |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11820110 | 1.00[EUR][1000 genomes] |
| rs11820931 | 1.00[EUR][1000 genomes] |
| rs11821930 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11822005 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11822075 | 1.00[EUR][1000 genomes] |
| rs11823066 | 1.00[EUR][1000 genomes] |
| rs11823749 | 1.00[EUR][1000 genomes] |
| rs11823863 | 1.00[EUR][1000 genomes] |
| rs11823950 | 1.00[EUR][1000 genomes] |
| rs11824142 | 1.00[EUR][1000 genomes] |
| rs11825118 | 1.00[EUR][1000 genomes] |
| rs11825264 | 1.00[AMR][1000 genomes] |
| rs11825651 | 1.00[EUR][1000 genomes] |
| rs11827254 | 1.00[AMR][1000 genomes] |
| rs11827460 | 1.00[EUR][1000 genomes] |
| rs11828495 | 1.00[EUR][1000 genomes] |
| rs11828752 | 1.00[EUR][1000 genomes] |
| rs11829016 | 1.00[EUR][1000 genomes] |
| rs55649137 | 1.00[EUR][1000 genomes] |
| rs55893782 | 1.00[EUR][1000 genomes] |
| rs57010664 | 1.00[EUR][1000 genomes] |
| rs57374267 | 1.00[EUR][1000 genomes] |
| rs57513498 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57811920 | 1.00[EUR][1000 genomes] |
| rs59019401 | 1.00[EUR][1000 genomes] |
| rs59597223 | 1.00[EUR][1000 genomes] |
| rs60734054 | 1.00[EUR][1000 genomes] |
| rs6592209 | 1.00[EUR][1000 genomes] |
| rs7113785 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7126964 | 1.00[AMR][1000 genomes] |
| rs7926834 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948410 | chr11:83918339-84812001 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045974 | chr11:84187214-84708462 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1048051 | chr11:84419442-84784233 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv541109 | chr11:84419442-84784233 | Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
