Variant report

Variant	rs57513498
Chromosome Location	chr11:84622661-84622662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84620550..84623155-chr11:84629095..84630856,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11819885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11820110	1.00[EUR][1000 genomes]
rs11820931	1.00[EUR][1000 genomes]
rs11821930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822005	1.00[EUR][1000 genomes]
rs11823066	1.00[EUR][1000 genomes]
rs11823749	1.00[EUR][1000 genomes]
rs11823863	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11825118	1.00[EUR][1000 genomes]
rs11825264	1.00[AMR][1000 genomes]
rs11825651	1.00[EUR][1000 genomes]
rs11827254	1.00[AMR][1000 genomes]
rs11828495	1.00[EUR][1000 genomes]
rs55649137	1.00[EUR][1000 genomes]
rs55893782	1.00[EUR][1000 genomes]
rs57010664	1.00[EUR][1000 genomes]
rs57374267	1.00[EUR][1000 genomes]
rs59019401	1.00[EUR][1000 genomes]
rs60734054	1.00[EUR][1000 genomes]
rs6592209	1.00[EUR][1000 genomes]
rs7113785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126964	1.00[AMR][1000 genomes]
rs7926834	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv817205	chr11:84497319-84628963	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv555625	chr11:84547441-84629013	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84621000-84631400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:84621200-84625200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:84621200-84625200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:84621200-84625400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:84621200-84625400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:84621200-84625600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:84621200-84633000	Weak transcription	Right Atrium	heart
8	chr11:84621400-84625600	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links