Variant report

Variant	rs11823066
Chromosome Location	chr11:84694468-84694469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84688116..84690229-chr11:84693313..84696189,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11819885	1.00[EUR][1000 genomes]
rs11820110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11820931	1.00[EUR][1000 genomes]
rs11821930	1.00[EUR][1000 genomes]
rs11822005	1.00[EUR][1000 genomes]
rs11822075	1.00[EUR][1000 genomes]
rs11823749	1.00[EUR][1000 genomes]
rs11823863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823950	1.00[EUR][1000 genomes]
rs11824142	1.00[EUR][1000 genomes]
rs11825118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825651	1.00[EUR][1000 genomes]
rs11827460	1.00[EUR][1000 genomes]
rs11828495	1.00[EUR][1000 genomes]
rs11828752	1.00[EUR][1000 genomes]
rs11829016	1.00[EUR][1000 genomes]
rs17147845	0.88[AFR][1000 genomes]
rs34142482	0.92[AFR][1000 genomes]
rs55649137	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893782	1.00[EUR][1000 genomes]
rs57010664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57374267	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57513498	1.00[EUR][1000 genomes]
rs57811920	1.00[EUR][1000 genomes]
rs58960201	1.00[EUR][1000 genomes]
rs59019401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597223	1.00[EUR][1000 genomes]
rs59601533	1.00[EUR][1000 genomes]
rs60734054	1.00[EUR][1000 genomes]
rs6592209	1.00[EUR][1000 genomes]
rs7113785	1.00[EUR][1000 genomes]
rs7926834	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054310	chr11:84661681-84702723	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84694200-84694600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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