Variant report

Variant	rs55893782
Chromosome Location	chr11:84797850-84797851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:84793270..84795600-chr11:84797702..84799867,2	MCF-7	breast:
2	chr11:84787875..84791541-chr11:84796129..84798361,4	MCF-7	breast:
3	chr11:84773038..84774022-chr11:84797656..84798368,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11819885	1.00[EUR][1000 genomes]
rs11820110	1.00[EUR][1000 genomes]
rs11821196	1.00[AMR][1000 genomes]
rs11821930	1.00[EUR][1000 genomes]
rs11822005	1.00[EUR][1000 genomes]
rs11822075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822292	1.00[AMR][1000 genomes]
rs11823066	1.00[EUR][1000 genomes]
rs11823863	1.00[EUR][1000 genomes]
rs11823950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825118	1.00[EUR][1000 genomes]
rs11825860	1.00[AMR][1000 genomes]
rs11827460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828495	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829016	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55649137	1.00[EUR][1000 genomes]
rs55966246	1.00[AMR][1000 genomes]
rs57010664	1.00[EUR][1000 genomes]
rs57374267	1.00[EUR][1000 genomes]
rs57513498	1.00[EUR][1000 genomes]
rs57811920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58434167	0.80[AFR][1000 genomes]
rs58960201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59019401	1.00[EUR][1000 genomes]
rs59597223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59601533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60734054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113785	1.00[EUR][1000 genomes]
rs7926834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84794400-84798400	Weak transcription	Aorta	Aorta
2	chr11:84797000-84798600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:84797000-84798600	Enhancers	NHDF-Ad	bronchial
4	chr11:84797200-84799400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:84797200-84799600	Enhancers	NH-A	brain
6	chr11:84797400-84798800	Enhancers	HMEC	breast
7	chr11:84797600-84798000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:84797600-84798000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:84797600-84798000	Enhancers	Osteobl	bone
10	chr11:84797600-84798200	Enhancers	A549	lung
11	chr11:84797600-84798400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:84797600-84798600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:84797600-84798600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:84797600-84799000	Enhancers	NHEK	skin
15	chr11:84797600-84800200	Enhancers	NHLF	lung

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