Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11821196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821282	0.86[AFR][1000 genomes]
rs11822075	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823950	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825860	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828495	1.00[AMR][1000 genomes]
rs11828674	1.00[YRI][hapmap]
rs11828752	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11829016	1.00[AMR][1000 genomes]
rs55814754	0.80[AFR][1000 genomes]
rs55893782	1.00[AMR][1000 genomes]
rs55966246	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57811920	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58960201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59597223	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59601533	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60734054	1.00[AMR][1000 genomes]
rs7111966	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7926834	1.00[AMR][1000 genomes]
rs7928064	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84844400-84848400	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:84844600-84846600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:84844800-84848600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:84845000-84847200	Weak transcription	Fetal Brain Male	brain
5	chr11:84846400-84846600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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