Variant report
| Variant | rs11828674 |
|---|---|
| Chromosome Location | chr11:84940166-84940167 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11821196 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs11822075 | 0.83[AMR][1000 genomes] |
| rs11822292 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs11823950 | 0.83[AMR][1000 genomes] |
| rs11824142 | 0.83[AMR][1000 genomes] |
| rs11825860 | 1.00[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs11827460 | 0.83[AMR][1000 genomes] |
| rs11828495 | 0.83[AMR][1000 genomes] |
| rs11828752 | 0.83[AMR][1000 genomes] |
| rs11829016 | 0.83[AMR][1000 genomes] |
| rs55814754 | 0.90[AFR][1000 genomes] |
| rs55893782 | 0.83[AMR][1000 genomes] |
| rs55966246 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs57811920 | 0.83[AMR][1000 genomes] |
| rs58960201 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs59597223 | 0.83[AMR][1000 genomes] |
| rs59601533 | 0.83[AMR][1000 genomes] |
| rs60507485 | 0.87[AFR][1000 genomes] |
| rs60734054 | 0.83[AMR][1000 genomes] |
| rs7111966 | 1.00[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs7926834 | 0.83[AMR][1000 genomes] |
| rs7928064 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044370 | chr11:84748993-85293233 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv898042 | chr11:84877221-84965437 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv898043 | chr11:84895033-85148689 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv898044 | chr11:84895033-85220773 | ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
