Variant report

Variant	rs7111966
Chromosome Location	chr11:84974869-84974870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11821196	0.89[AFR][1000 genomes]
rs11821282	0.83[AMR][1000 genomes]
rs11821288	1.00[AMR][1000 genomes]
rs11822292	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11824096	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11824846	1.00[AMR][1000 genomes]
rs11825860	1.00[YRI][hapmap]
rs11827879	1.00[AMR][1000 genomes]
rs11828674	1.00[YRI][hapmap]
rs55814754	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55966246	0.80[AFR][1000 genomes]
rs57325992	0.83[AMR][1000 genomes]
rs58960201	0.84[AFR][1000 genomes]
rs59420262	0.83[AMR][1000 genomes]
rs61184572	1.00[AMR][1000 genomes]
rs7928064	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7943906	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84965200-84977000	Weak transcription	Aorta	Aorta
2	chr11:84967800-85019400	Weak transcription	Ovary	ovary
3	chr11:84969400-84977200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:84972800-84980200	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:84974600-84976000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:84974800-84975600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:84974800-84978600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:84974800-84998400	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links