Variant report

Variant	rs59019401
Chromosome Location	chr11:84739799-84739800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11819885	1.00[EUR][1000 genomes]
rs11820110	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11820931	1.00[EUR][1000 genomes]
rs11821930	1.00[EUR][1000 genomes]
rs11822005	1.00[EUR][1000 genomes]
rs11822075	1.00[EUR][1000 genomes]
rs11823066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823749	1.00[EUR][1000 genomes]
rs11823863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823950	1.00[EUR][1000 genomes]
rs11824142	1.00[EUR][1000 genomes]
rs11825118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825651	1.00[EUR][1000 genomes]
rs11827460	1.00[EUR][1000 genomes]
rs11828495	1.00[EUR][1000 genomes]
rs11828752	1.00[EUR][1000 genomes]
rs11829016	1.00[EUR][1000 genomes]
rs55649137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893782	1.00[EUR][1000 genomes]
rs57010664	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57374267	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57513498	1.00[EUR][1000 genomes]
rs57811920	1.00[EUR][1000 genomes]
rs58960201	1.00[EUR][1000 genomes]
rs59597223	1.00[EUR][1000 genomes]
rs59601533	1.00[EUR][1000 genomes]
rs60734054	1.00[EUR][1000 genomes]
rs6592209	1.00[EUR][1000 genomes]
rs7113785	1.00[EUR][1000 genomes]
rs7926834	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv555629	chr11:84720020-84744926	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84739600-84740000	ZNF genes & repeats	Fetal Stomach	stomach

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