Variant report

Variant	rs34536461
Chromosome Location	chr20:1197697-1197698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:1196637..1198683-chr20:1279227..1282045,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13037574	1.00[ASN][1000 genomes]
rs13039630	1.00[ASN][1000 genomes]
rs13041509	1.00[ASN][1000 genomes]
rs13041998	1.00[ASN][1000 genomes]
rs13043799	1.00[ASN][1000 genomes]
rs13044333	1.00[ASN][1000 genomes]
rs2146664	1.00[ASN][1000 genomes]
rs2181489	1.00[ASN][1000 genomes]
rs2317434	1.00[ASN][1000 genomes]
rs28656114	1.00[ASN][1000 genomes]
rs34203958	1.00[ASN][1000 genomes]
rs34249627	1.00[ASN][1000 genomes]
rs34336746	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34346665	1.00[ASN][1000 genomes]
rs34529094	1.00[ASN][1000 genomes]
rs34600405	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35083367	1.00[ASN][1000 genomes]
rs35477122	1.00[ASN][1000 genomes]
rs35528870	1.00[ASN][1000 genomes]
rs35982100	1.00[ASN][1000 genomes]
rs36009592	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813979	1.00[ASN][1000 genomes]
rs4814006	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55892814	1.00[ASN][1000 genomes]
rs7262551	1.00[ASN][1000 genomes]
rs7266780	1.00[ASN][1000 genomes]
rs74181570	1.00[ASN][1000 genomes]
rs74181571	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74181572	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531450	chr20:809607-1221836	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1058524	chr20:821434-1254865	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv544138	chr20:821434-1254865	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1057939	chr20:824980-1316778	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv912585	chr20:992713-1210647	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1057097	chr20:1030940-1314265	Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv516776	chr20:1195784-1233893	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv912586	chr20:1195784-1248286	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv518957	chr20:1195784-1250463	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1195200-1198800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr20:1195400-1197800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr20:1195600-1198600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr20:1195600-1198600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr20:1195600-1198800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr20:1195800-1197800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr20:1196000-1198400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr20:1196600-1197800	Enhancers	K562	blood
9	chr20:1196600-1198400	Enhancers	Primary T cells from cord blood	blood
10	chr20:1196600-1198600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr20:1196600-1198800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr20:1197200-1197800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr20:1197200-1198200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr20:1197400-1197800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr20:1197400-1197800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr20:1197400-1197800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:1197600-1197800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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