Variant report

Variant	rs55892814
Chromosome Location	chr20:1169627-1169628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:1167926..1170503-chr20:1170945..1173932,3	K562	blood:
2	chr20:1168079..1170501-chr20:1189390..1192354,2	K562	blood:
3	chr20:1169038..1170828-chr20:1174673..1177057,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13037574	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13039630	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13041509	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13041998	1.00[ASN][1000 genomes]
rs13043799	1.00[ASN][1000 genomes]
rs13044333	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146664	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181489	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2317434	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28656114	1.00[ASN][1000 genomes]
rs34203958	1.00[ASN][1000 genomes]
rs34249627	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34336746	1.00[ASN][1000 genomes]
rs34346665	1.00[ASN][1000 genomes]
rs34529094	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34536461	1.00[ASN][1000 genomes]
rs34600405	1.00[ASN][1000 genomes]
rs35083367	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35477122	1.00[ASN][1000 genomes]
rs35528870	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35982100	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36009592	1.00[ASN][1000 genomes]
rs4813979	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4814006	1.00[ASN][1000 genomes]
rs7262551	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7266780	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74181569	0.81[EUR][1000 genomes]
rs74181570	1.00[ASN][1000 genomes]
rs74181571	1.00[ASN][1000 genomes]
rs74181572	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531450	chr20:809607-1221836	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1058524	chr20:821434-1254865	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv544138	chr20:821434-1254865	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1057939	chr20:824980-1316778	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv912585	chr20:992713-1210647	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1057097	chr20:1030940-1314265	Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3372799	chr20:1167052-1171250	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1168400-1172200	Weak transcription	Aorta	Aorta
2	chr20:1169200-1170200	Enhancers	HepG2	liver
3	chr20:1169200-1171000	Weak transcription	Right Atrium	heart
4	chr20:1169200-1171400	Weak transcription	Placenta	Placenta
5	chr20:1169200-1171400	Enhancers	K562	blood
6	chr20:1169400-1169800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:1169400-1171600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:1169400-1171600	Weak transcription	Fetal Intestine Large	intestine
9	chr20:1169400-1173800	Weak transcription	Liver	Liver
10	chr20:1169400-1174600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr20:1169400-1175600	Weak transcription	Fetal Intestine Small	intestine
12	chr20:1169400-1182000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr20:1169600-1170200	Weak transcription	Right Ventricle	heart

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