Variant report

Variant	rs34546081
Chromosome Location	chr11:101357881-101357882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101357724..101358302-chr4:125044591..125045215,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10160542	0.91[AFR][1000 genomes]
rs10160655	1.00[AFR][1000 genomes]
rs10501980	0.95[AFR][1000 genomes]
rs10791477	0.83[AFR][1000 genomes]
rs10791478	0.84[AFR][1000 genomes]
rs10791479	0.95[AFR][1000 genomes]
rs10791480	0.95[AFR][1000 genomes]
rs10791481	0.96[AFR][1000 genomes]
rs10791482	0.96[AFR][1000 genomes]
rs10791483	0.95[AFR][1000 genomes]
rs10791485	0.95[AFR][1000 genomes]
rs10791486	0.95[AFR][1000 genomes]
rs10791487	0.89[AFR][1000 genomes]
rs10791488	0.81[AFR][1000 genomes]
rs10895116	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10895117	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10895118	1.00[AFR][1000 genomes]
rs10895119	0.88[AFR][1000 genomes]
rs10895121	0.90[AFR][1000 genomes]
rs10895123	0.95[AFR][1000 genomes]
rs10895124	0.94[AFR][1000 genomes]
rs10895125	0.89[AFR][1000 genomes]
rs11224784	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224785	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224787	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11224789	0.95[AFR][1000 genomes]
rs11224790	0.85[AFR][1000 genomes]
rs11224791	0.95[AFR][1000 genomes]
rs11224792	0.95[AFR][1000 genomes]
rs11224800	0.89[AFR][1000 genomes]
rs11224801	0.88[AFR][1000 genomes]
rs11821584	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826165	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222976	0.90[AFR][1000 genomes]
rs12270234	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361641	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787386	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789670	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793746	0.90[ASN][1000 genomes]
rs12796163	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801419	0.90[ASN][1000 genomes]
rs12806241	0.90[ASN][1000 genomes]
rs36111323	0.90[ASN][1000 genomes]
rs4129254	0.91[AFR][1000 genomes]
rs4129255	0.91[AFR][1000 genomes]
rs4403777	0.88[AFR][1000 genomes]
rs61915999	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6590866	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6590867	0.87[AFR][1000 genomes]
rs6590868	0.81[AFR][1000 genomes]
rs6590869	0.88[AFR][1000 genomes]
rs6590870	0.89[AFR][1000 genomes]
rs6590872	0.82[AFR][1000 genomes]
rs6590874	0.80[AFR][1000 genomes]
rs68106103	0.81[AFR][1000 genomes]
rs71462689	0.86[AFR][1000 genomes]
rs7924434	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924551	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927664	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927797	0.81[AFR][1000 genomes]
rs7927803	0.81[AFR][1000 genomes]
rs7931830	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932073	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7934021	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938416	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952474	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9326313	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101330200-101361400	Weak transcription	Fetal Lung	lung
2	chr11:101337800-101368200	Weak transcription	Ovary	ovary
3	chr11:101350000-101384800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:101350200-101358200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:101350200-101359600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:101353800-101361000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:101356400-101358000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:101357000-101358000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:101357000-101360000	Enhancers	NHDF-Ad	bronchial
10	chr11:101357200-101359200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:101357200-101359800	Enhancers	NHLF	lung
12	chr11:101357400-101359000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:101357600-101358200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:101357600-101359200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:101357600-101359400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:101357800-101358000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:101357800-101358400	Enhancers	Fetal Brain Male	brain

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