Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11224784	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11224785	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11224805	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11224811	1.00[JPT][hapmap]
rs11821584	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11826165	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12270234	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12361641	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12786558	0.81[EUR][1000 genomes]
rs12787386	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12789670	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12791865	0.90[EUR][1000 genomes]
rs12793746	1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796163	0.90[ASN][1000 genomes]
rs12806241	1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34546081	0.90[ASN][1000 genomes]
rs36111323	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61915999	0.90[ASN][1000 genomes]
rs6590866	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7924434	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7924551	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7927664	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7931830	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7932073	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7934021	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7938416	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101330200-101361400	Weak transcription	Fetal Lung	lung
2	chr11:101337800-101368200	Weak transcription	Ovary	ovary
3	chr11:101342200-101357200	Weak transcription	NHLF	lung
4	chr11:101349600-101357800	Weak transcription	Fetal Brain Male	brain
5	chr11:101350000-101384800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:101350200-101356800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:101350200-101358200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:101350200-101359600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:101353800-101361000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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