Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11224765	0.84[CEU][hapmap];0.87[AMR][1000 genomes]
rs11224772	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs11224773	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11224779	0.88[JPT][hapmap]
rs11224780	1.00[JPT][hapmap]
rs11224781	0.88[JPT][hapmap]
rs11224782	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11224783	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11224805	0.84[CEU][hapmap]
rs11224811	0.82[CEU][hapmap]
rs11224815	0.84[CEU][hapmap]
rs11822192	0.88[JPT][hapmap]
rs12362157	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12362848	1.00[JPT][hapmap]
rs12366144	0.88[JPT][hapmap]
rs12786558	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12788461	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12793746	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs12795728	0.91[AMR][1000 genomes]
rs12801419	0.90[EUR][1000 genomes]
rs12804368	0.87[AMR][1000 genomes]
rs12804391	0.87[AMR][1000 genomes]
rs12805398	0.87[AMR][1000 genomes]
rs12806241	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs36111323	0.89[EUR][1000 genomes]
rs6590864	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7117447	1.00[JPT][hapmap]
rs7118253	0.96[ASN][1000 genomes]
rs7948300	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101314400-101352800	Weak transcription	Aorta	Aorta
2	chr11:101330200-101361400	Weak transcription	Fetal Lung	lung
3	chr11:101337800-101368200	Weak transcription	Ovary	ovary
4	chr11:101342200-101357200	Weak transcription	NHLF	lung
5	chr11:101346400-101352200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:101349600-101357800	Weak transcription	Fetal Brain Male	brain
7	chr11:101350000-101384800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:101350200-101356800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:101350200-101358200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:101350200-101359600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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