Variant report

Variant	rs11224772
Chromosome Location	chr11:101338573-101338574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10444351	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10791472	0.91[ASN][1000 genomes]
rs10791473	0.95[ASN][1000 genomes]
rs10791474	0.95[ASN][1000 genomes]
rs10791475	0.95[ASN][1000 genomes]
rs10895109	0.91[ASN][1000 genomes]
rs10895110	0.95[ASN][1000 genomes]
rs10895112	0.93[ASN][1000 genomes]
rs10895113	0.95[ASN][1000 genomes]
rs10895114	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11224695	1.00[YRI][hapmap]
rs11224762	0.89[CHD][hapmap]
rs11224765	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11224768	0.98[ASN][1000 genomes]
rs11224769	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11224770	0.95[ASN][1000 genomes]
rs11224771	0.95[ASN][1000 genomes]
rs11224773	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11224805	1.00[MKK][hapmap]
rs11224815	1.00[MKK][hapmap]
rs11819801	0.91[ASN][1000 genomes]
rs12786558	0.83[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12788461	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12791865	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs12793746	1.00[MKK][hapmap]
rs12794328	1.00[YRI][hapmap]
rs12795728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12797690	0.95[ASN][1000 genomes]
rs12804368	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12804391	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12804595	0.98[ASN][1000 genomes]
rs12805398	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824933	0.89[ASN][1000 genomes]
rs4396256	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4405276	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4489713	0.95[ASN][1000 genomes]
rs4520564	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs4522135	0.93[ASN][1000 genomes]
rs6590859	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs6590860	0.95[ASN][1000 genomes]
rs6590861	0.95[ASN][1000 genomes]
rs6590862	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7105083	0.95[ASN][1000 genomes]
rs7109734	0.93[ASN][1000 genomes]
rs7110162	1.00[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs7113655	0.89[ASN][1000 genomes]
rs7120857	0.95[ASN][1000 genomes]
rs7121124	0.95[ASN][1000 genomes]
rs7928028	0.95[ASN][1000 genomes]
rs7928922	0.89[ASN][1000 genomes]
rs7930422	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7931399	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7935581	1.00[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7936768	0.95[ASN][1000 genomes]
rs7942665	0.95[ASN][1000 genomes]
rs7947695	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7948940	0.89[CHD][hapmap]
rs7950048	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11224772	MMP1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101314400-101352800	Weak transcription	Aorta	Aorta
2	chr11:101329400-101341800	Weak transcription	NHLF	lung
3	chr11:101330200-101361400	Weak transcription	Fetal Lung	lung
4	chr11:101334400-101339000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:101337400-101338600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:101337600-101340800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:101337600-101341200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:101337600-101341200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:101337600-101341400	Weak transcription	Fetal Stomach	stomach
10	chr11:101337800-101341200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:101337800-101368200	Weak transcription	Ovary	ovary
12	chr11:101338200-101340800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links