Variant report

Variant	rs7948940
Chromosome Location	chr11:101311359-101311360
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:101210889..101216560-chr11:101311326..101315087,6	MCF-7	breast:
2	chr11:101195442..101202127-chr11:101308962..101315927,5	MCF-7	breast:
3	chr11:101299826..101304335-chr11:101307356..101314246,9	MCF-7	breast:
4	chr11:100992008..101001878-chr11:101300412..101311512,29	MCF-7	breast:
5	chr11:101305136..101310354-chr11:101310861..101314380,7	MCF-7	breast:
6	chr11:101310309..101314049-chr11:101319815..101323131,4	MCF-7	breast:
7	chr11:101206834..101209402-chr11:101310886..101313505,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10082588	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10444351	0.81[CEU][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10791472	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10791474	0.81[AMR][1000 genomes]
rs10791475	0.81[AMR][1000 genomes]
rs10895109	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10895110	0.81[AMR][1000 genomes]
rs10895113	0.81[AMR][1000 genomes]
rs10895114	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs11224762	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11224763	0.98[ASN][1000 genomes]
rs11224764	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224765	1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11224766	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11224768	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11224769	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11224770	0.81[AMR][1000 genomes]
rs11224771	0.81[AMR][1000 genomes]
rs11224772	0.89[CHD][hapmap]
rs11224773	0.89[CHD][hapmap]
rs11819801	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12273188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12276736	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12788461	1.00[CHD][hapmap]
rs12797690	0.82[AMR][1000 genomes]
rs12798689	0.93[YRI][hapmap]
rs12804368	0.98[ASN][1000 genomes]
rs3824933	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4255512	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4271356	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4396256	0.81[CEU][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4405276	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4489713	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4522135	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6590859	0.81[CEU][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6590860	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6590861	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6590862	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs7105083	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7108099	0.93[YRI][hapmap]
rs7110162	0.81[CEU][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7113655	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7120857	0.81[AMR][1000 genomes]
rs7121124	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7928028	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7928922	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7930422	0.84[CEU][hapmap]
rs7931399	0.81[CEU][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7935581	0.81[CEU][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs7947695	0.80[CEU][hapmap]
rs7950048	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7951897	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7952146	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101302000-101316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:101304400-101312400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:101305000-101312200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:101307000-101311800	Weak transcription	Ovary	ovary
5	chr11:101307000-101312000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:101307600-101311600	Weak transcription	Aorta	Aorta
7	chr11:101307600-101312400	Weak transcription	Fetal Lung	lung
8	chr11:101309200-101311600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:101309200-101314800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:101309600-101312200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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