Variant report

Variant	rs12276736
Chromosome Location	chr11:101315197-101315198
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101195442..101202127-chr11:101308962..101315927,5	MCF-7	breast:
2	chr11:100997989..101001513-chr11:101311577..101317753,7	MCF-7	breast:
3	chr11:100903142..100906263-chr11:101312314..101315427,3	MCF-7	breast:
4	chr11:101223010..101225906-chr11:101312280..101315324,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082588	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444351	0.80[EUR][1000 genomes]
rs10791472	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10895109	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11224762	0.90[ASN][1000 genomes]
rs11224763	0.92[ASN][1000 genomes]
rs11224764	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11224765	0.92[ASN][1000 genomes]
rs11224766	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224768	0.80[EUR][1000 genomes]
rs11224769	0.80[EUR][1000 genomes]
rs11819801	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12788461	0.86[ASN][1000 genomes]
rs12797690	0.80[AMR][1000 genomes]
rs12804368	0.96[ASN][1000 genomes]
rs3824933	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4255512	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4271356	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4405276	0.80[EUR][1000 genomes]
rs4489713	0.80[EUR][1000 genomes]
rs4522135	0.80[EUR][1000 genomes]
rs6590859	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6590860	0.80[EUR][1000 genomes]
rs6590861	0.80[EUR][1000 genomes]
rs7105083	0.80[EUR][1000 genomes]
rs7110162	0.80[EUR][1000 genomes]
rs7113655	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7928922	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7931399	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7948940	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950048	0.80[EUR][1000 genomes]
rs7951897	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7952146	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101302000-101316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:101311600-101315400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:101311600-101317600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:101311600-101319600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:101311800-101315400	Enhancers	Ovary	ovary
6	chr11:101311800-101315400	Enhancers	Pancreas	Pancrea
7	chr11:101311800-101317400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:101312000-101318000	Enhancers	HSMM	muscle
9	chr11:101312000-101318800	Enhancers	NHLF	lung
10	chr11:101312200-101318400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:101312400-101315200	Enhancers	Left Ventricle	heart
12	chr11:101312400-101315400	Enhancers	Spleen	Spleen
13	chr11:101312400-101317400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:101312600-101316800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:101312600-101318400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:101312800-101316200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:101312800-101318600	Enhancers	Osteobl	bone
18	chr11:101313000-101315200	Weak transcription	HSMMtube	muscle
19	chr11:101313200-101316600	Weak transcription	NH-A	brain
20	chr11:101313600-101316000	Enhancers	Stomach Mucosa	stomach
21	chr11:101313800-101315200	Enhancers	Gastric	stomach
22	chr11:101314000-101315200	Enhancers	Adipose Nuclei	Adipose
23	chr11:101314000-101315400	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr11:101314200-101316400	Enhancers	Fetal Lung	lung
25	chr11:101314200-101316600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:101314200-101318400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:101314400-101315400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:101314400-101315400	Enhancers	Small Intestine	intestine
29	chr11:101314400-101321200	Enhancers	NHDF-Ad	bronchial
30	chr11:101314400-101352800	Weak transcription	Aorta	Aorta
31	chr11:101314600-101315200	Enhancers	Fetal Muscle Leg	muscle
32	chr11:101314600-101315400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr11:101314600-101316400	Enhancers	Fetal Heart	heart
34	chr11:101314600-101318800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:101314800-101315200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:101314800-101315200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:101314800-101315200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:101314800-101315200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr11:101314800-101315200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:101314800-101315200	Enhancers	A549	lung
41	chr11:101314800-101315400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:101314800-101315400	Enhancers	HMEC	breast
43	chr11:101315000-101315200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr11:101315000-101315600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:101315000-101315800	Enhancers	Right Ventricle	heart

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