Variant report

Variant	rs11224766
Chromosome Location	chr11:101312430-101312431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:101210889..101216560-chr11:101311326..101315087,6	MCF-7	breast:
2	chr11:101168163..101170220-chr11:101312254..101314141,3	MCF-7	breast:
3	chr11:100948922..100949526-chr11:101312204..101312930,2	MCF-7	breast:
4	chr11:100948922..100949470-chr11:101312204..101312842,2	MCF-7	breast:
5	chr11:101206532..101207579-chr11:101312064..101313386,25	MCF-7	breast:
6	chr11:101195442..101202127-chr11:101308962..101315927,5	MCF-7	breast:
7	chr11:101311732..101314257-chr11:101315971..101319551,3	MCF-7	breast:
8	chr11:101206647..101207551-chr11:101312233..101313047,5	MCF-7	breast:
9	chr11:101299826..101304335-chr11:101307356..101314246,9	MCF-7	breast:
10	chr11:101206549..101207524-chr11:101312064..101313238,15	MCF-7	breast:
11	chr11:101206531..101207825-chr11:101312105..101313129,9	MCF-7	breast:
12	chr11:100997989..101001513-chr11:101311577..101317753,7	MCF-7	breast:
13	chr11:101305136..101310354-chr11:101310861..101314380,7	MCF-7	breast:
14	chr11:101310309..101314049-chr11:101319815..101323131,4	MCF-7	breast:
15	chr11:100994873..100997835-chr11:101312314..101314341,3	MCF-7	breast:
16	chr11:100903142..100906263-chr11:101312314..101315427,3	MCF-7	breast:
17	chr11:101222231..101223017-chr11:101312370..101313238,2	MCF-7	breast:
18	chr11:101223010..101225906-chr11:101312280..101315324,4	MCF-7	breast:
19	chr11:101169659..101171002-chr11:101312115..101313137,8	MCF-7	breast:
20	chr11:101206834..101209402-chr11:101310886..101313505,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10082588	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10444351	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10791472	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10791474	0.81[AMR][1000 genomes]
rs10791475	0.81[AMR][1000 genomes]
rs10895109	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10895110	0.81[AMR][1000 genomes]
rs10895113	0.81[AMR][1000 genomes]
rs10895114	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs11224762	0.89[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11224763	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224764	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11224765	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11224768	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11224769	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11224770	0.81[AMR][1000 genomes]
rs11224771	0.81[AMR][1000 genomes]
rs11819801	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12273188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12276736	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12788461	0.82[ASN][1000 genomes]
rs12797690	0.82[AMR][1000 genomes]
rs12798689	0.87[YRI][hapmap]
rs12804368	1.00[ASN][1000 genomes]
rs12804391	1.00[CHB][hapmap]
rs3824933	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4255512	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4271356	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4396256	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4405276	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4489713	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4522135	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590859	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6590860	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590861	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6590862	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs7105083	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7108099	0.87[YRI][hapmap]
rs7110162	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7113655	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7120857	0.81[AMR][1000 genomes]
rs7121124	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7928028	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7928922	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7930422	1.00[CHB][hapmap]
rs7931399	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7935581	0.80[CEU][hapmap];0.81[AMR][1000 genomes]
rs7947695	1.00[CHB][hapmap]
rs7948940	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950048	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7951897	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7952146	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101302000-101316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:101309200-101314800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:101311400-101313000	Enhancers	Fetal Muscle Leg	muscle
4	chr11:101311400-101313800	Enhancers	NHDF-Ad	bronchial
5	chr11:101311600-101315400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:101311600-101317600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:101311600-101319600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:101311800-101313200	Enhancers	Stomach Mucosa	stomach
9	chr11:101311800-101315400	Enhancers	Ovary	ovary
10	chr11:101311800-101315400	Enhancers	Pancreas	Pancrea
11	chr11:101311800-101317400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:101312000-101312600	Enhancers	Right Ventricle	heart
13	chr11:101312000-101312600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:101312000-101313200	Enhancers	Liver	Liver
15	chr11:101312000-101314000	Enhancers	Right Atrium	heart
16	chr11:101312000-101314200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:101312000-101314400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:101312000-101318000	Enhancers	HSMM	muscle
19	chr11:101312000-101318800	Enhancers	NHLF	lung
20	chr11:101312200-101313000	Enhancers	Aorta	Aorta
21	chr11:101312200-101313200	Enhancers	Fetal Heart	heart
22	chr11:101312200-101313200	Enhancers	NH-A	brain
23	chr11:101312200-101313800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:101312200-101318400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:101312400-101312800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:101312400-101312800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:101312400-101312800	Weak transcription	Gastric	stomach
28	chr11:101312400-101312800	Flanking Active TSS	Osteobl	bone
29	chr11:101312400-101313000	Enhancers	Fetal Lung	lung
30	chr11:101312400-101313000	Enhancers	HSMMtube	muscle
31	chr11:101312400-101315200	Enhancers	Left Ventricle	heart
32	chr11:101312400-101315400	Enhancers	Spleen	Spleen
33	chr11:101312400-101317400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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